STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2114Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bur:Bcep18194_B2394 transcriptional regulator, LysR family. (313 aa)    
Predicted Functional Partners:
Pnap_2111
2-chlorobenzoate 1,2-dioxygenase; PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: cgb:cg2638 benzoate dioxygenase small subunit.
 
     0.804
Pnap_2112
PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: rme:Rmet_4882 Rieske (2Fe-2S) region.
 
     0.796
Pnap_2110
Toluate 1,2-dioxygenase electron transfer component; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: pfl:PFL_3856 ring-hydroxylating dioxygenase, ferredoxin reductase subunit.
 
   
 0.758
Pnap_0955
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bur:Bcep18194_B1014 transcriptional regulator, LysR family.
  
     0.719
Pnap_0441
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4207 transcriptional regulator, LysR family.
  
     0.718
Pnap_3436
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0844 transcriptional regulator, LysR family.
  
     0.717
Pnap_2109
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pen:PSEEN3140 cis-1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase,(cis-1,2-dihydroxy-3, 4-cyclohexadiene-1-carboxylate dehydrogenase) (2-hydro-1,2-dihydroxybenzoate dehydrogenase) (DHB dehydrogenase); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.690
Pnap_2173
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_2404 transcriptional regulator, LysR family.
  
     0.686
Pnap_1339
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4814 transcriptional regulator, LysR family.
  
     0.684
Pnap_2113
Hypothetical protein.
       0.682
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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