STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2140PFAM: MmgE/PrpD family protein; KEGG: pol:Bpro_0581 MmgE/PrpD. (461 aa)    
Predicted Functional Partners:
Pnap_2139
PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_0580 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
 0.951
Pnap_2143
KEGG: pol:Bpro_0584 hypothetical protein.
 
  
 0.919
Pnap_2142
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_0583 acyl-CoA dehydrogenase-like.
 
  
 0.801
Pnap_2141
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_0582 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
 
    0.747
Pnap_0845
PFAM: Citrate synthase; KEGG: reu:Reut_A1760 citrate synthase.
  
  
 0.722
Pnap_3037
KEGG: pol:Bpro_3605 citrate synthase I; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; Belongs to the citrate synthase family.
  
  
 0.722
Pnap_3507
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_4038 glyoxalase/bleomycin resistance protein/dioxygenase.
 
    0.719
Pnap_2138
PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0579 uncharacterized protein UPF0065.
 
    0.686
Pnap_3810
PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_4556 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
 0.660
Pnap_2033
Methylitaconate delta2-delta3-isomerase; PFAM: protein of unknown function DUF453; KEGG: rpb:RPB_0878 protein of unknown function DUF453.
 
    0.641
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.