STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2143KEGG: pol:Bpro_0584 hypothetical protein. (300 aa)    
Predicted Functional Partners:
Pnap_2142
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_0583 acyl-CoA dehydrogenase-like.
 
    0.920
Pnap_2140
PFAM: MmgE/PrpD family protein; KEGG: pol:Bpro_0581 MmgE/PrpD.
 
  
 0.919
Pnap_3808
KEGG: pol:Bpro_4554 hypothetical protein.
  
  
0.902
Pnap_2141
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_0582 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
  
 0.879
Pnap_2139
PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_0580 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.771
Pnap_3507
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_4038 glyoxalase/bleomycin resistance protein/dioxygenase.
  
    0.668
Pnap_3809
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_4555 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
  
 0.627
Pnap_2144
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_0586 transcriptional regulator, LysR family.
 
     0.596
Pnap_3810
PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_4556 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.580
Pnap_2944
2,3-dihydro-2,3-dihydroxybenzoyl-CoA ring cleavage enzyme; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pol:Bpro_1628 enoyl-CoA hydratase/isomerase.
  
  
  0.556
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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