STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2174PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_2403 aminotransferase, class I and II. (394 aa)    
Predicted Functional Partners:
Pnap_2793
TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: pol:Bpro_1792 chorismate mutase.
 
  
 0.865
Pnap_2173
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_2404 transcriptional regulator, LysR family.
       0.842
Pnap_1034
Xanthine dehydrogenase, molybdenum binding subunit apoprotein; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: pol:Bpro_1480 xanthine dehydrogenase.
 
 
  
 0.725
Pnap_2172
PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: pol:Bpro_2405 cobalamin (vitamin B12) biosynthesis CbiX protein.
     
 0.664
Pnap_1035
PFAM: ferredoxin; molybdopterin dehydrogenase, FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: pol:Bpro_1481 molybdopterin dehydrogenase, FAD-binding.
 
      0.635
Pnap_2175
KEGG: pol:Bpro_2400 hypothetical protein.
       0.538
Pnap_0683
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: pol:Bpro_0791 glutamate synthase (ferredoxin).
     
 0.520
Pnap_2170
PFAM: permease YjgP/YjgQ family protein; KEGG: pol:Bpro_2407 permease YjgP/YjgQ.
       0.513
Pnap_2171
PFAM: permease YjgP/YjgQ family protein; KEGG: pol:Bpro_2406 permease YjgP/YjgQ.
       0.513
Pnap_0793
PFAM: NAD(P)H dehydrogenase (quinone); KEGG: pol:Bpro_1192 NAD(P)H dehydrogenase (quinone).
   
    0.468
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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