STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2191Transcriptional regulator, ArsR family; PFAM: regulatory protein, ArsR; KEGG: ttj:TTHA0156 hypothetical protein. (138 aa)    
Predicted Functional Partners:
Pnap_2192
Hypothetical protein.
       0.773
Pnap_2190
Hypothetical protein.
       0.655
Pnap_2189
PFAM: regulatory protein, MerR; KEGG: sma:SAV6758 MerR-family transcriptional regulator.
     
 0.483
Pnap_2188
PFAM: Carboxymuconolactone decarboxylase; KEGG: mag:amb3965 uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit.
     
 0.479
Pnap_2193
DNA helicase/exodeoxyribonuclease V, subunit A; PFAM: UvrD/REP helicase; KEGG: pol:Bpro_2265 UvrD/REP helicase.
  
    0.462
Pnap_2194
DNA helicase/exodeoxyribonuclease V, subunit B; KEGG: pol:Bpro_2264 RecB family exonuclease-like.
       0.454
Pnap_0437
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: mca:MCA1204 sensory box histidine kinase/response regulator.
  
  
 0.427
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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