STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2193DNA helicase/exodeoxyribonuclease V, subunit A; PFAM: UvrD/REP helicase; KEGG: pol:Bpro_2265 UvrD/REP helicase. (1103 aa)    
Predicted Functional Partners:
Pnap_2194
DNA helicase/exodeoxyribonuclease V, subunit B; KEGG: pol:Bpro_2264 RecB family exonuclease-like.
   
 0.983
Pnap_2533
PFAM: Relaxase/mobilization nuclease family protein; KEGG: gme:Gmet_A3574 relaxase/mobilization nuclease domain.
  
 
 0.915
Pnap_2208
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; KEGG: pol:Bpro_2250 twin-arginine translocation pathway signal; TC 3.A.1.4.-.
  
     0.673
Pnap_3883
KEGG: pol:Bpro_4643 protein of unknown function DUF1631.
 
   
 0.661
Pnap_2195
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pol:Bpro_2263 thioredoxin; Belongs to the thioredoxin family.
  
    0.650
Pnap_3043
KEGG: pol:Bpro_3613 putative transmembrane protein.
  
  
 0.611
Pnap_3743
Hypothetical protein.
  
 
 0.611
Pnap_2502
PFAM: Conjugal transfer TrbD family protein; KEGG: atc:AGR_pTi_85 probable TrbD gene.
  
     0.578
Pnap_3663
Transporter, CPA2 family; PFAM: sodium/hydrogen exchanger; KEGG: pol:Bpro_4469 sodium/hydrogen exchanger; TC 2.A.37.
  
     0.552
Pnap_0240
PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_0311 protein of unknown function DUF6, transmembrane.
 
     0.536
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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