node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Pnap_2195 | Pnap_2197 | Pnap_2195 | Pnap_2197 | TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pol:Bpro_2263 thioredoxin; Belongs to the thioredoxin family. | PFAM: ribosomal protein L31; KEGG: pol:Bpro_2261 ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | 0.423 |
Pnap_2195 | rho | Pnap_2195 | Pnap_2196 | TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pol:Bpro_2263 thioredoxin; Belongs to the thioredoxin family. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.905 |
Pnap_2197 | Pnap_2195 | Pnap_2197 | Pnap_2195 | PFAM: ribosomal protein L31; KEGG: pol:Bpro_2261 ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pol:Bpro_2263 thioredoxin; Belongs to the thioredoxin family. | 0.423 |
Pnap_2197 | Pnap_2796 | Pnap_2197 | Pnap_2796 | PFAM: ribosomal protein L31; KEGG: pol:Bpro_2261 ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.888 |
Pnap_2197 | nusG | Pnap_2197 | Pnap_3645 | PFAM: ribosomal protein L31; KEGG: pol:Bpro_2261 ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. | 0.407 |
Pnap_2197 | rho | Pnap_2197 | Pnap_2196 | PFAM: ribosomal protein L31; KEGG: pol:Bpro_2261 ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.786 |
Pnap_2197 | rpoA | Pnap_2197 | Pnap_0345 | PFAM: ribosomal protein L31; KEGG: pol:Bpro_2261 ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.522 |
Pnap_2796 | Pnap_2197 | Pnap_2796 | Pnap_2197 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | PFAM: ribosomal protein L31; KEGG: pol:Bpro_2261 ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | 0.888 |
Pnap_2796 | nusA | Pnap_2796 | Pnap_2012 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.816 |
Pnap_2796 | nusG | Pnap_2796 | Pnap_3645 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. | 0.688 |
Pnap_2796 | pnp | Pnap_2796 | Pnap_1420 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 3' exoribonuclease; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.711 |
Pnap_2796 | rho | Pnap_2796 | Pnap_2196 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.841 |
Pnap_2796 | rpoA | Pnap_2796 | Pnap_0345 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.937 |
Pnap_2796 | rpoB | Pnap_2796 | Pnap_3640 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.977 |
Pnap_2796 | rpoC | Pnap_2796 | Pnap_3639 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.974 |
Pnap_2796 | yidC | Pnap_2796 | Pnap_4113 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Protein translocase subunit yidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.453 |
nusA | Pnap_2796 | Pnap_2012 | Pnap_2796 | NusA antitermination factor; Participates in both transcription termination and antitermination. | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.816 |
nusA | nusG | Pnap_2012 | Pnap_3645 | NusA antitermination factor; Participates in both transcription termination and antitermination. | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. | 0.964 |
nusA | pnp | Pnap_2012 | Pnap_1420 | NusA antitermination factor; Participates in both transcription termination and antitermination. | 3' exoribonuclease; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.904 |
nusA | rho | Pnap_2012 | Pnap_2196 | NusA antitermination factor; Participates in both transcription termination and antitermination. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.902 |