STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2235PFAM: PhoH family protein; SMART: Nucleotide binding protein, PINc; KEGG: pol:Bpro_2186 PhoH-like protein. (561 aa)    
Predicted Functional Partners:
Pnap_2234
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pol:Bpro_2187 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
       0.607
Pnap_2233
PFAM: protein of unknown function DUF498; KEGG: pol:Bpro_2188 protein of unknown function DUF498.
 
     0.489
Pnap_3794
TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: pol:Bpro_4613 sigma 54 modulation protein/ribosomal protein S30EA.
  
    0.481
Pnap_2387
PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: pol:Bpro_2157 putative serine protein kinase, PrkA.
   
  
 0.444
Pnap_1735
TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: pol:Bpro_1975 ribonuclease, Rne/Rng family.
  
    0.418
Pnap_2386
PFAM: protein of unknown function DUF444; KEGG: pol:Bpro_2158 protein of unknown function DUF444; Belongs to the UPF0229 family.
   
    0.412
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.