STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2252KEGG: stm:STM1034 putative RecA/RadA recombinase. (120 aa)    
Predicted Functional Partners:
Pnap_2253
PFAM: peptidase S14, ClpP; KEGG: stm:STM0912 ATP-dependent protease; Belongs to the peptidase S14 family.
 
    0.922
Pnap_2254
TIGRFAM: phage portal protein, lambda family; PFAM: phage portal protein, lambda; KEGG: xfa:XF0510 hypothetical protein.
 
    0.903
Pnap_0961
ATP-dependent Clp protease proteolytic subunit ClpP; PFAM: peptidase S14, ClpP; KEGG: sdn:Sden_3249 peptidase S14, ClpP; Belongs to the peptidase S14 family.
 
    0.816
Pnap_2257
PFAM: phage terminase GpA; KEGG: hch:HCH_02894 bacteriophage tail assembly protein.
 
    0.751
Pnap_2250
Hypothetical protein.
       0.651
Pnap_2251
Hypothetical protein.
       0.651
Pnap_2249
KEGG: xfa:XF0518 hypothetical protein.
       0.596
Pnap_2248
TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: sas:SAS0944 hypothetical protein.
 
     0.490
Pnap_2258
Hypothetical protein; KEGG: hch:HCH_02893 phage DNA packaging protein, Nu1 subunit of terminase.
  
    0.429
Pnap_3315
PFAM: phage late control D family protein; KEGG: xcc:XCC2994 phage-related tail protein.
 
     0.424
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.