STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2254TIGRFAM: phage portal protein, lambda family; PFAM: phage portal protein, lambda; KEGG: xfa:XF0510 hypothetical protein. (529 aa)    
Predicted Functional Partners:
Pnap_2257
PFAM: phage terminase GpA; KEGG: hch:HCH_02894 bacteriophage tail assembly protein.
  
 0.941
Pnap_2252
KEGG: stm:STM1034 putative RecA/RadA recombinase.
 
    0.903
Pnap_2253
PFAM: peptidase S14, ClpP; KEGG: stm:STM0912 ATP-dependent protease; Belongs to the peptidase S14 family.
 
    0.899
Pnap_2255
KEGG: eci:UTI89_C5118 hypothetical protein.
       0.798
Pnap_0961
ATP-dependent Clp protease proteolytic subunit ClpP; PFAM: peptidase S14, ClpP; KEGG: sdn:Sden_3249 peptidase S14, ClpP; Belongs to the peptidase S14 family.
 
    0.778
Pnap_3315
PFAM: phage late control D family protein; KEGG: xcc:XCC2994 phage-related tail protein.
 
   
 0.751
Pnap_3303
TIGRFAM: phage tail protein I; KEGG: sit:TM1040_1290 phage tail protein I.
 
  
 0.747
Pnap_3302
PFAM: Baseplate J family protein; KEGG: sit:TM1040_1291 baseplate J-like protein.
 
   
 0.746
Pnap_3300
PFAM: phage baseplate assembly protein V; KEGG: bps:BPSL0156 phage baseplate assembly protein.
 
   
 0.722
Pnap_3309
PFAM: phage major tail tube protein; KEGG: xom:XOO_1589 phage-related tail protein.
 
   
 0.700
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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