STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2304TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rfr:Rfer_1940 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (396 aa)    
Predicted Functional Partners:
Pnap_2302
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_1942 ABC transporter related.
 
 
 0.961
Pnap_2303
PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_1941 protein of unknown function DUF214.
 
   
 0.953
Pnap_2301
PFAM: heat shock protein Hsp20; KEGG: pol:Bpro_1199 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family.
 
     0.785
Pnap_1153
PFAM: protein of unknown function DUF214; KEGG: pol:Bpro_3224 protein of unknown function DUF214.
  
  
 0.614
Pnap_2300
PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: pol:Bpro_1200 transport-associated.
     
 0.602
Pnap_3550
PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_3187 protein of unknown function DUF214.
 
  
 0.578
Pnap_1147
PFAM: protein of unknown function DUF214; KEGG: pol:Bpro_1679 protein of unknown function DUF214.
  
  
 0.516
Pnap_0566
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rso:RS02156 putative outer membrane drug efflux lipoprotein.
  
 
 0.503
Pnap_1126
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_1664 type I secretion outer membrane protein, TolC.
  
 
 0.503
Pnap_1262
KEGG: bxe:Bxe_B2295 putative outer membrane efflux protein involved in copper resistance.
  
 
 0.503
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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