STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2317KEGG: mca:MCA0256 ferredoxin, 2Fe-2S. (107 aa)    
Predicted Functional Partners:
Pnap_2318
KEGG: rpc:RPC_4469 tetratricopeptide TPR_2.
 
     0.844
Pnap_2152
KEGG: pol:Bpro_2766 hypothetical protein.
  
     0.772
Pnap_0825
NAD-dependent formate dehydrogenase flavoprotein subunit; PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: rfr:Rfer_3270 NADH dehydrogenase (quinone).
 
 
 0.723
Pnap_2315
Electron-transferring-flavoprotein dehydrogenase; Part of an electron transfer system. Belongs to the ETF-QO/FixC family.
       0.720
Pnap_2316
Putative ferredoxin like protein; Could be a 3Fe-4S cluster-containing protein.
       0.720
Pnap_2313
PFAM: electron transfer flavoprotein beta-subunit; KEGG: bxe:Bxe_B1436 electron transfer flavoprotein, fix A (beta subunit).
     
 0.640
Pnap_2314
PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: bxe:Bxe_B1435 electron transfer flavoprotein FixB (alpha subunit).
       0.631
Pnap_1428
TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: pol:Bpro_3252 NADH-quinone oxidoreductase, E subunit.
 
 
 0.621
nifW
Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
       0.595
Pnap_2310
TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase; KEGG: bxe:Bxe_B1438 putative homocitrate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
       0.592
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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