STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2356RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: pol:Bpro_4892 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (195 aa)    
Predicted Functional Partners:
Pnap_2355
KEGG: pol:Bpro_4893 hypothetical protein.
  
 
 0.873
Pnap_3067
PFAM: Anti sigma-E protein RseA family protein; KEGG: pol:Bpro_3642 anti sigma-E protein, RseA, Burkholderiaceae specific.
  
 
 0.671
Pnap_2361
PFAM: DoxX family protein; KEGG: cps:CPS_0809 DoxD family protein.
 
  
 0.577
Pnap_2357
PFAM: Redoxin domain protein; KEGG: tbd:Tbd_0272 thioredoxin family protein.
  
  
 0.568
Pnap_2359
PFAM: protein of unknown function DUF692; KEGG: cps:CPS_0811 hypothetical protein.
 
    0.553
Pnap_2360
KEGG: cps:CPS_0810 hypothetical protein.
 
    0.544
Pnap_1703
Signal transduction histidine kinase with CheB and CheR activity; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
 
 0.518
Pnap_2358
KEGG: cvi:CV3512 probable signal peptide protein.
  
    0.415
Pnap_1684
KEGG: mlo:mll5117 hypothetical protein.
  
 
 0.408
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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