STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2358KEGG: cvi:CV3512 probable signal peptide protein. (94 aa)    
Predicted Functional Partners:
Pnap_2359
PFAM: protein of unknown function DUF692; KEGG: cps:CPS_0811 hypothetical protein.
 
  
 0.991
Pnap_2360
KEGG: cps:CPS_0810 hypothetical protein.
 
  
 0.976
Pnap_2361
PFAM: DoxX family protein; KEGG: cps:CPS_0809 DoxD family protein.
 
  
 0.958
Pnap_1994
Putative adenylate/guanylate cyclase; PFAM: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: pol:Bpro_2451 putative adenylate/guanylate cyclase.
  
    0.611
Pnap_3949
PFAM: Forkhead-associated protein; KEGG: pol:Bpro_4677 FHA domain containing protein.
   
    0.609
Pnap_2503
PFAM: CagE, TrbE, VirB component of type IV transporter system; SMART: AAA ATPase; KEGG: nha:Nham_4566 type IV secretion/conjugal transfer ATPase, VirB4 family.
   
    0.528
Pnap_2357
PFAM: Redoxin domain protein; KEGG: tbd:Tbd_0272 thioredoxin family protein.
  
    0.484
Pnap_2510
PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: bam:Bamb_6630 conjugal transfer protein TrbG/VirB9/CagX.
   
    0.473
Pnap_2511
PFAM: conjugation TrbI family protein; KEGG: ret:RHE_PA00169 conjugal transfer protein I.
   
    0.473
Pnap_0144
PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: pol:Bpro_0610 fimbrial biogenesis outer membrane usher protein.
   
    0.470
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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