STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2366PFAM: periplasmic binding protein; KEGG: pol:Bpro_2784 periplasmic binding protein. (283 aa)    
Predicted Functional Partners:
Pnap_2363
PFAM: transport system permease protein; KEGG: pol:Bpro_2781 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.988
Pnap_2362
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2780 ABC transporter related.
  
 
 0.977
Pnap_2364
PFAM: periplasmic binding protein; KEGG: pol:Bpro_2782 periplasmic binding protein.
 
    
0.853
Pnap_2368
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cvi:CV0494 probable outer membrane receptor protein.
 
  
 0.847
Pnap_2367
TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: pol:Bpro_2785 cobyrinic acid a,c-diamide synthase.
  
  
 0.818
Pnap_2365
Adenosylcobinamide kinase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.
     
 0.816
Pnap_2149
TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: pol:Bpro_2763 cob(II)yrinic acid a,c-diamide reductase.
 
  
 0.703
icmF
methylmalonyl-CoA mutase, large subunit; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
 
  
 0.654
Pnap_2042
PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: rfr:Rfer_1441 pyridoxamine 5'-phosphate oxidase-related, FMN-binding.
 
    0.596
Pnap_3854
PFAM: iron permease FTR1; KEGG: rfr:Rfer_3306 iron permease FTR1.
   
  
 0.535
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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