STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2406KEGG: reu:Reut_C6169 putative poly-gamma-glutamate biosynthesis enzyme. (328 aa)    
Predicted Functional Partners:
Pnap_2405
KEGG: reu:Reut_C6168 hypothetical protein.
       0.798
ddpX
Peptidase M15D, vanX D-ala-D-ala dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.
 
      0.597
Pnap_1722
murein-DD-endopeptidase, Serine peptidase, MEROPS family S11; PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: pol:Bpro_2323 peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Belongs to the peptidase S11 family.
 
      0.506
pncB
Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP; Belongs to the NAPRTase family.
  
    0.502
pncB-2
Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP; Belongs to the NAPRTase family.
  
    0.502
Pnap_2185
PFAM: dienelactone hydrolase; KEGG: pol:Bpro_2392 phosphoribosyltransferase.
 
    0.445
Pnap_2407
PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pol:Bpro_2361 DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family.
       0.414
Pnap_2404
PFAM: Glutathione S-transferase, N-terminal domain; KEGG: mca:MCA1303 glutathione S-transferase.
       0.412
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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