STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2440PFAM: Recombinase; KEGG: ppu:PP_3026 phage recombinase, putative. (540 aa)    
Predicted Functional Partners:
rimO
SSU ribosomal protein S12P methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
       0.574
Pnap_3290
PFAM: phage capsid scaffolding; KEGG: xom:XOO_1608 phage-related capsid scaffold protein.
   
    0.534
Pnap_3298
PFAM: P2 phage tail completion R family protein; KEGG: rso:RSc1929 probable tail completion-like protein.
   
    0.534
Pnap_3314
PFAM: phage P2 GpU family protein; KEGG: xom:XOO_1585 phage-related tail protein.
   
    0.520
Pnap_4044
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: pol:Bpro_4822 histidine kinase.
  
     0.519
Pnap_2563
Periplasmic lipoprotein-like protein; KEGG: rsp:RSP_1544 hypothetical signal peptide protein.
  
     0.482
Pnap_3291
TIGRFAM: phage major capsid protein, P2 family; PFAM: phage major capsid protein, P2; KEGG: rso:RSc1937 probable bacteriophage protein.
   
    0.480
Pnap_3293
PFAM: phage head completion; KEGG: bps:BPSL0168 phage head completion/stabilization protein.
   
    0.480
Pnap_3289
PFAM: protein of unknown function DUF264; putative terminase ATPase subunit; KEGG: bps:BPSL0172 phage terminase, ATPase subunit.
   
    0.477
Pnap_3288
TIGRFAM: phage portal protein, PBSX family; PFAM: phage portal protein; KEGG: bma:BMA2691 phage portal protein, PBSX family.
   
    0.476
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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