STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2465PFAM: Proline dehydrogenase; KEGG: tfu:Tfu_0434 proline dehydrogenase. (319 aa)    
Predicted Functional Partners:
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
   
 0.926
Pnap_3771
PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: rfr:Rfer_3883 ornithine cyclodeaminase.
  
 
 0.924
Pnap_4070
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
    
  0.907
Pnap_0733
PFAM: alpha/beta hydrolase fold; KEGG: bxe:Bxe_B2466 putative proline iminopeptidase.
     
  0.900
Pnap_1088
Prolyl aminopeptidase, Serine peptidase, MEROPS family S33; KEGG: pol:Bpro_1603 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; Belongs to the peptidase S33 family.
     
  0.900
Pnap_2466
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: transcriptional regulator, GntR family.
       0.778
Pnap_3772
Arginase; TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: pol:Bpro_4603 arginase; Belongs to the arginase family.
 
  
 0.482
Pnap_0845
PFAM: Citrate synthase; KEGG: reu:Reut_A1760 citrate synthase.
   
  
 0.403
Pnap_3037
KEGG: pol:Bpro_3605 citrate synthase I; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; Belongs to the citrate synthase family.
   
  
 0.403
Pnap_2467
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:p1B4 IstB transposition helper protein.
       0.400
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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