STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2480PFAM: OmpW family protein; KEGG: bxe:Bxe_C1185 outer membrane protein (porin), OmpW family. (211 aa)    
Predicted Functional Partners:
Pnap_1827
PFAM: OmpW family protein; KEGG: pha:PSHAa2155 protein W (OmpW).
  
     0.772
nagE
PFAM: dihydrodipicolinate synthetase; KEGG: mmc:Mmcs_1629 dihydrodipicolinate synthetase; Belongs to the DapA family.
       0.601
Pnap_3781
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase, mono-heme subunit/FixO; KEGG: rfr:Rfer_1931 cytochrome c oxidase, cbb3-type, subunit II.
 
    0.597
Pnap_3774
KEGG: rfr:Rfer_1938 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.576
Pnap_1269
KEGG: bte:BTH_I1800 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.574
nagC
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mmc:Mmcs_1630 glyoxalase/bleomycin resistance protein/dioxygenase.
       0.566
Pnap_3782
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase, subunit I; KEGG: rfr:Rfer_1930 cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.534
Pnap_2482
PFAM: aldehyde dehydrogenase; KEGG: mlo:mll7197 dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.515
Pnap_2822
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_1934 4Fe-4S ferredoxin, iron-sulfur binding.
 
    0.462
Pnap_2096
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_4301 4Fe-4S ferredoxin, iron-sulfur binding.
 
    0.461
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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