STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2503PFAM: CagE, TrbE, VirB component of type IV transporter system; SMART: AAA ATPase; KEGG: nha:Nham_4566 type IV secretion/conjugal transfer ATPase, VirB4 family. (814 aa)    
Predicted Functional Partners:
Pnap_2510
PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: bam:Bamb_6630 conjugal transfer protein TrbG/VirB9/CagX.
 
 
 0.996
Pnap_2511
PFAM: conjugation TrbI family protein; KEGG: ret:RHE_PA00169 conjugal transfer protein I.
 
 
 0.996
Pnap_2502
PFAM: Conjugal transfer TrbD family protein; KEGG: atc:AGR_pTi_85 probable TrbD gene.
 
  
 0.995
Pnap_2505
Type IV secretory pathway TrbL components-like protein; KEGG: bms:BRA0366 trbL protein.
 
  
 0.990
Pnap_2497
PFAM: type II secretion system protein E; KEGG: dps:DPPB12 probable conjugal transfer protein TrbB.
 
  
 0.983
Pnap_2509
PFAM: Conjugal transfer protein; KEGG: nha:Nham_4562 conjugal transfer protein.
 
  
 0.983
Pnap_2501
PFAM: Conjugal transfer protein TrbC; KEGG: ret:RHE_PA00177 conjugal transfer protein C.
   
 0.982
Pnap_2504
KEGG: nha:Nham_4565 conjugal transfer protein TrbJ.
    
 0.961
Pnap_2530
PFAM: TRAG family protein; KEGG: mlo:mlr6395 conjugal transfer protein traG.
  
 0.859
Pnap_2531
Conjugation peptidase TraF, Serine peptidase, MEROPS family S26C; KEGG: ppr:PBPRB1620 hypothetical conjugal transfer protein TraF.
 
   
 0.812
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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