STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2512PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: rfr:Rfer_1597 cytochrome c biogenesis protein, transmembrane protein. (244 aa)    
Predicted Functional Partners:
Pnap_0584
TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: dar:Daro_3997 periplasmic protein thiol:disulfide oxidoreductase DsbE.
 
 
 0.905
Pnap_2513
PFAM: Thioredoxin domain; KEGG: rfr:Rfer_1598 hypothetical protein.
 
 
 0.903
Pnap_3367
Putative thiol:disulfide interchange protein (periplasmic); Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.
  
 
 0.837
Pnap_2412
PFAM: DSBA oxidoreductase; KEGG: pol:Bpro_2358 DsbA oxidoreductase.
  
 
 0.828
Pnap_1853
Transcriptional regulator, Fis family; KEGG: pol:Bpro_2559 hypothetical protein.
  
 
 0.644
Pnap_2939
PFAM: Redoxin domain protein; KEGG: pol:Bpro_2908 thiol-disulfide isomerase and thioredoxins-like.
 
 
 0.616
Pnap_0217
PFAM: Redoxin domain protein; KEGG: pol:Bpro_0270 putative transmembrane protein.
  
 
 0.537
Pnap_3393
PFAM: Redoxin domain protein; KEGG: pol:Bpro_1098 thioredoxin family protein, putative.
  
 
 0.537
msrB
KEGG: pol:Bpro_2582 protein-methionine-S-oxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; Belongs to the MsrB Met sulfoxide reductase family.
   
 
 0.528
Pnap_2514
Hypothetical protein; KEGG: pol:Bpro_5539 transposase, IS204/IS1001/IS1096/IS1165.
       0.525
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.