STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2536TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: pol:Bpro_2702 polyhydroxyalkanoate synthesis repressor PhaR. (204 aa)    
Predicted Functional Partners:
Pnap_2805
TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: pol:Bpro_2139 poly(R)-hydroxyalkanoic acid synthase, class I.
 
   
 0.816
Pnap_3566
PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: sil:SPO0112 poly(3-hydroxyalkanoate) polymerase family protein.
 
   
 0.796
Pnap_3470
TIGRFAM: phasin family protein; KEGG: rfr:Rfer_3122 phasin.
 
   
 0.704
Pnap_3102
TIGRFAM: phasin family protein; KEGG: rfr:Rfer_3122 phasin.
 
   
 0.659
Pnap_1612
TIGRFAM: phasin family protein; KEGG: pol:Bpro_3088 phasin.
 
   
 0.654
Pnap_0780
PFAM: protein of unknown function DUF971; KEGG: pol:Bpro_0859 protein of unknown function DUF971.
 
      0.633
Pnap_2803
TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_2141 acetoacetyl-CoA reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.617
Pnap_2538
PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_2704 alpha/beta hydrolase fold.
 
     0.585
Pnap_2375
TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: pol:Bpro_2173 polyhydroxyalkanoate depolymerase, intracellular.
 
   
 0.539
Pnap_2756
TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: pol:Bpro_1839 intracellular polyhydroxyalkanoate depolymerase.
 
   
 0.538
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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