STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2562PFAM: protein of unknown function DUF1111; KEGG: pfo:Pfl_4489 protein of unknown function DUF1111. (475 aa)    
Predicted Functional Partners:
Pnap_2561
KEGG: pae:PA4370 putative iron-regulated protein.
 
    0.984
Pnap_2563
Periplasmic lipoprotein-like protein; KEGG: rsp:RSP_1544 hypothetical signal peptide protein.
 
  
 0.981
Pnap_2564
PFAM: Uncharacterised conserved protein UCP028101; KEGG: dar:Daro_1057 twin-arginine translocation pathway signal.
 
  
 0.980
Pnap_1610
PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_3092 extracellular solute-binding protein, family 1.
 
    0.550
Pnap_2568
Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: pol:Bpro_3051 TonB-like; TC 2.C.1.1.1.
   
    0.473
Pnap_0851
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1149 binding-protein-dependent transport systems inner membrane component.
  
    0.457
Pnap_2559
PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: pol:Bpro_3048 2OG-Fe(II) oxygenase.
  
    0.436
Pnap_2560
PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: pol:Bpro_3049 FMN-dependent alpha-hydroxy acid dehydrogenase.
       0.412
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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