STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2577Peptidase M23B; PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: pol:Bpro_3059 peptidase M23B. (301 aa)    
Predicted Functional Partners:
Pnap_1342
PFAM: peptidase M23B; KEGG: bbr:BB1398 putative peptidase.
 
   
 0.750
surE
5'-nucleotidase / 3'-nucleotidase / exopolyphosphatase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
 
  
 0.747
Pnap_2578
KEGG: pol:Bpro_3060 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase.
     
 0.716
rlmD
23S rRNA m(5)U-1939 methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
       0.651
Pnap_3584
PFAM: peptidase M23B; KEGG: xcv:XCV3487 putative metalloendopeptidase.
 
   
 0.639
Pnap_2065
PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: pol:Bpro_2084 peptidoglycan glycosyltransferase.
  
   
 0.593
Pnap_0671
KEGG: pol:Bpro_0780 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase.
  
   
 0.588
Pnap_0025
PFAM: glycosyl transferase, family 51; KEGG: stt:t3243 monofunctional biosynthetic peptidoglycan transglycosylase.
  
   
 0.566
Pnap_2061
PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: pol:Bpro_2329 glycosyl transferase, family 51.
  
   
 0.520
Pnap_3063
Signal peptidase I, Serine peptidase, MEROPS family S26A; KEGG: pol:Bpro_3637 peptidase S26A, signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; Belongs to the peptidase S26 family.
 
  
 0.519
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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