STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2606PFAM: RbsD or FucU transport; KEGG: pol:Bpro_3206 RbsD or FucU transport; Belongs to the RbsD / FucU family. (150 aa)    
Predicted Functional Partners:
Pnap_2607
PFAM: ROK family protein; KEGG: pol:Bpro_3207 hypothetical protein.
 
   
 0.910
Pnap_2605
Monosaccharide ABC transporter ATP-binding protein, CUT2 family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_1901 ABC transporter related; TC 3.A.1.2.-.
 
   
 0.831
Pnap_2604
Monosaccharide ABC transporter membrane protein, CUT2 family; PFAM: inner-membrane translocator; KEGG: rfr:Rfer_1902 inner-membrane translocator; TC 3.A.1.2.-; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.811
Pnap_2608
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: pol:Bpro_3203 periplasmic binding protein/LacI transcriptional regulator; TC 3.A.1.2.-.
 
   
 0.696
Pnap_2602
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rfr:Rfer_1903 periplasmic binding protein/LacI transcriptional regulator; TC 3.A.1.2.-.
 
   
 0.634
Pnap_2603
PFAM: porin, Gram-negative type; KEGG: rfr:Rfer_0527 porin, gram-negative type.
       0.434
Pnap_3688
PFAM: aldo/keto reductase; KEGG: rfr:Rfer_0342 aldo/keto reductase.
 
     0.415
Pnap_2601
PFAM: PfkB domain protein; KEGG: pol:Bpro_3202 PfkB.
 
     0.411
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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