STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2660KEGG: pol:Bpro_1902 ribosomal subunit interface protein, putative. (119 aa)    
Predicted Functional Partners:
rpsU
PFAM: ribosomal protein S21; KEGG: pol:Bpro_3284 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.791
rpmA
PFAM: ribosomal protein L27; KEGG: pol:Bpro_0838 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.789
rpsI
PFAM: ribosomal protein S9; KEGG: pol:Bpro_4112 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.787
rpmH
PFAM: ribosomal protein L34; KEGG: pol:Bpro_4908 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
   
 
 0.784
rplI
LSU ribosomal protein L9P; Binds to the 23S rRNA.
  
   0.782
rpmC
PFAM: ribosomal protein L29; KEGG: pol:Bpro_0264 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
    
 
 0.780
rpsE
SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.779
rpsD
SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.779
rplY
LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
   
   0.779
rpsP
PFAM: ribosomal protein S16; KEGG: pol:Bpro_1690 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
 
 0.779
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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