STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2661PFAM: Carboxymuconolactone decarboxylase; KEGG: pol:Bpro_1901 carboxymuconolactone decarboxylase. (125 aa)    
Predicted Functional Partners:
Pnap_2121
3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_1857 alpha/beta hydrolase fold.
  
 0.993
Pnap_1657
TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: fumarate lyase; KEGG: pol:Bpro_1855 3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.963
Pnap_3811
3-carboxy-cis,cis-muconate cycloisomerase; PFAM: fumarate lyase; KEGG: pol:Bpro_4557 fumarate lyase.
 
 
 0.959
Pnap_2188
PFAM: Carboxymuconolactone decarboxylase; KEGG: mag:amb3965 uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit.
 
  
 
0.916
Pnap_2118
PFAM: Muconolactone delta-isomerase; KEGG: rme:Rmet_4877 muconolactone delta-isomerase.
    
 0.909
Pnap_1600
KEGG: pol:Bpro_3102 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding.
 
  
 0.594
Pnap_1901
KEGG: rfr:Rfer_0339 4-hydroxybenzoate 3-monooxygenase; TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase, FAD-binding.
 
   
 0.586
Pnap_2662
PFAM: Catalase domain protein; KEGG: neu:NE1886 catalase; Belongs to the catalase family.
     
 0.527
Pnap_2660
KEGG: pol:Bpro_1902 ribosomal subunit interface protein, putative.
       0.418
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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