STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2703PFAM: NIPSNAP family containing protein; KEGG: bja:bll3657 hypothetical protein. (208 aa)    
Predicted Functional Partners:
Pnap_2702
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bja:bll3656 hypothetical protein.
 
     0.943
Pnap_2704
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: bja:bll3658 hypothetical protein.
     0.914
Pnap_2707
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: bja:bll3659 putative dehydrogenase.
     0.815
Pnap_2706
PFAM: Shikimate dehydrogenase substrate binding, N-terminal domain protein; KEGG: bja:blr3858 putative shikimate 5-dehydrogenase.
 
     0.780
Pnap_2705
PFAM: regulatory proteins, IclR; KEGG: bja:blr3665 transcriptional regulatory protein.
 
     0.764
Pnap_2710
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: rme:Rmet_5492 fumarate reductase/succinate dehydrogenase flavoprotein-like protein.
     0.750
Pnap_2711
PFAM: NIPSNAP family containing protein; KEGG: rme:Rmet_5493 NIPSNAP domain protein.
  
     0.696
Pnap_0632
KEGG: dar:Daro_3554 hypothetical protein.
  
     0.484
Pnap_2701
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bja:blr3304 acyl-CoA dehydrogenase.
       0.453
Pnap_1561
Shikimate dehydrogenase; PFAM: UBA/THIF-type NAD/FAD binding protein; Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein; KEGG: pol:Bpro_4495 shikimate 5-dehydrogenase.
 
     0.442
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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