STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2708Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: rme:Rmet_4017 transcriptional regulator, AraC family. (317 aa)    
Predicted Functional Partners:
Pnap_2711
PFAM: NIPSNAP family containing protein; KEGG: rme:Rmet_5493 NIPSNAP domain protein.
 
     0.713
Pnap_2709
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bja:blr3672 oxidoreductase.
 
     0.618
Pnap_2710
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: rme:Rmet_5492 fumarate reductase/succinate dehydrogenase flavoprotein-like protein.
 
     0.596
Pnap_0601
PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: nar:Saro_2815 6-phosphogluconate dehydrogenase, NAD-binding.
  
     0.444
Pnap_2705
PFAM: regulatory proteins, IclR; KEGG: bja:blr3665 transcriptional regulatory protein.
  
  
 0.427
Pnap_2733
Protocatechuate 4,5-dioxygenase beta subunit; PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: rfr:Rfer_0294 protocatechuate 4,5-dioxygenase.
  
     0.425
Pnap_1901
KEGG: rfr:Rfer_0339 4-hydroxybenzoate 3-monooxygenase; TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase, FAD-binding.
 
   
 0.424
Pnap_2717
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; PFAM: Extracellular ligand-binding receptor; KEGG: reu:Reut_C6330 twin-arginine translocation pathway signal; TC 3.A.1.4.-.
 
     0.415
Pnap_2027
Protocatechuate 4,5-dioxygenase beta subunit; PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: rfr:Rfer_0330 protocatechuate 4,5-dioxygenase.
  
     0.410
Pnap_2734
Protocatechuate 4,5-dioxygenase alpha subunit; PFAM: Extradiol ring-cleavage dioxygenase LigAB, LigA subunit; KEGG: rfr:Rfer_0295 extradiol ring-cleavage dioxygenase LigAB, LigA subunit.
  
     0.407
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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