STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2756TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: pol:Bpro_1839 intracellular polyhydroxyalkanoate depolymerase. (409 aa)    
Predicted Functional Partners:
Pnap_2805
TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: pol:Bpro_2139 poly(R)-hydroxyalkanoic acid synthase, class I.
 
  
 0.974
Pnap_3566
PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: sil:SPO0112 poly(3-hydroxyalkanoate) polymerase family protein.
 
  
 0.973
Pnap_2375
TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: pol:Bpro_2173 polyhydroxyalkanoate depolymerase, intracellular.
  
  
 
0.907
Pnap_3987
Putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane; Participates in the degradation of poly-3-hydroxybutyrate (PHB). It works downstream of poly(3-hydroxybutyrate) depolymerase, hydrolyzing D(-)-3-hydroxybutyrate oligomers of various length (3HB- oligomers) into 3HB-monomers; Belongs to the D-(-)-3-hydroxybutyrate oligomer hydrolase family.
     
  0.900
Pnap_2755
KEGG: pol:Bpro_1840 glutathione S-transferase-like.
 
     0.583
Pnap_2536
TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: pol:Bpro_2702 polyhydroxyalkanoate synthesis repressor PhaR.
 
   
 0.538
Pnap_3249
PFAM: Patatin; KEGG: rfr:Rfer_2026 patatin.
  
     0.525
Pnap_3052
PFAM: Patatin; KEGG: pol:Bpro_3621 patatin.
  
     0.484
Pnap_2539
TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_2705 3-hydroxybutyrate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
   
 0.422
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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