STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2761PFAM: protein of unknown function DUF1446; KEGG: bbr:BB3206 hypothetical protein. (458 aa)    
Predicted Functional Partners:
Pnap_2762
KEGG: bbr:BB3205 hypothetical protein.
     0.985
Pnap_2763
PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5882 uncharacterized protein UPF0065.
       0.663
Pnap_2824
PFAM: beta-lactamase domain protein; KEGG: bxe:Bxe_B0675 putative metallo-beta-lactamase family protein.
 
    
 0.571
Pnap_2760
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bpa:BPP2885 probable LysR-family transcriptional regulator.
       0.543
icmF
methylmalonyl-CoA mutase, large subunit; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
     
 0.513
Pnap_2883
Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
    0.462
Pnap_0471
Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: pol:Bpro_4160 propionyl-CoA carboxylase.
  
  
 0.450
Pnap_2381
propionyl-CoA carboxylase carboxyltransferase subunit; PFAM: carboxyl transferase; KEGG: pol:Bpro_2164 carboxyl transferase.
  
  
 0.450
Pnap_0841
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: reu:Reut_A1762 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.439
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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