STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2813PFAM: Roadblock/LC7 family protein; KEGG: noc:Noc_1488 Roadblock/LC7. (120 aa)    
Predicted Functional Partners:
Pnap_0370
PFAM: protein of unknown function, ATP binding; KEGG: noc:Noc_0133 conserved hypothetical ATP binding protein.
 
 
 0.985
Pnap_2811
KEGG: noc:Noc_1486 ABC-type phosphate/phosphonate transport system periplasmic component.
 
     0.947
Pnap_2812
KEGG: noc:Noc_1487 PAS domain protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
     0.824
Pnap_2809
Hypothetical protein.
       0.632
Pnap_2810
Hypothetical protein.
       0.632
Pnap_2808
KEGG: noc:Noc_0134 hypothetical protein.
  
    0.551
Pnap_2814
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pol:Bpro_2130 antibiotic biosynthesis monooxygenase.
       0.463
Pnap_2806
PFAM: protein of unknown function DUF152; KEGG: pol:Bpro_2137 protein of unknown function DUF152; Belongs to the multicopper oxidase YfiH/RL5 family.
       0.407
Pnap_2807
TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; KEGG: pol:Bpro_2136 maleylacetoacetate isomerase.
       0.407
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.