STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2834PFAM: Rhodanese domain protein; KEGG: noc:Noc_2007 metallo-beta-lactamase family protein. (126 aa)    
Predicted Functional Partners:
Pnap_2832
PFAM: Rhodanese domain protein; KEGG: vfi:VFA0125 rhodanese-related sulfurtransferase.
 
     0.930
Pnap_2821
PFAM: beta-lactamase domain protein; KEGG: mfa:Mfla_1733 beta-lactamase-like protein.
 
 
 0.914
Pnap_0925
PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: pol:Bpro_0884 UBA/ThiF-type NAD/FAD binding fold.
   
 0.912
Pnap_2833
PFAM: OsmC family protein; KEGG: bur:Bcep18194_B1521 hypothetical protein.
  
    0.781
Pnap_2824
PFAM: beta-lactamase domain protein; KEGG: bxe:Bxe_B0675 putative metallo-beta-lactamase family protein.
 
 
 0.759
Pnap_2831
Sulfide-quinone oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_3759 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
   
 0.653
Pnap_2829
KEGG: bte:BTH_II0057 hypothetical protein.
  
  
 0.546
Pnap_2830
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: bte:BTH_II0056 probable porin (omp) abc transporter protein.
       0.505
Pnap_2828
PFAM: acriflavin resistance protein; KEGG: bte:BTH_II0058 transporter, AcrB/D/F family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.488
Pnap_2827
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bte:BTH_II0059 efflux transporter, RND family, MFP subunit, putative; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.486
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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