STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2836PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_3624 protein of unknown function DUF214. (397 aa)    
Predicted Functional Partners:
Pnap_2835
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3625 ABC transporter related.
 
 
 0.974
Pnap_2838
Hypothetical protein; KEGG: rfr:Rfer_3622 transcriptional regulator, TetR family.
 
   
 0.962
Pnap_2837
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rfr:Rfer_3623 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 
 0.950
Pnap_2839
TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rfr:Rfer_3644 cation diffusion facilitator family transporter.
       0.758
Pnap_3549
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3186 ABC transporter related.
 
 
 0.597
Pnap_2842
KEGG: eba:ebA6677 hypothetical protein.
 
     0.560
lolD
ABC transporter related protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
 
 0.490
Pnap_1146
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1678 ABC transporter related.
  
 
 0.490
Pnap_1154
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3214 ABC transporter related.
  
 
 0.490
Pnap_2302
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_1942 ABC transporter related.
  
 
 0.490
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.