STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2879PFAM: cytochrome c, class I; KEGG: pol:Bpro_2050 cytochrome c, class I. (106 aa)    
Predicted Functional Partners:
Pnap_2878
KEGG: pol:Bpro_2051 hypothetical protein.
       0.597
Pnap_1498
PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_1744 Rieske (2Fe-2S) region.
  
     0.547
Pnap_0164
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: bbr:BB2407 putative ABC-transporter membrane-spanning ATP-binding component.
  
     0.541
Pnap_2825
PFAM: cytochrome c, class I; KEGG: bmb:BruAb2_0829 cytochrome c family protein.
 
   
 0.477
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.