STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2932Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; helix-turn-helix, Fis-type; LysR, substrate-binding; KEGG: pol:Bpro_2902 transcriptional regulator, LysR family. (317 aa)    
Predicted Functional Partners:
Pnap_2931
PFAM: Pirin domain protein domain protein; Cupin 2, conserved barrel domain protein; KEGG: pol:Bpro_2901 pirin-like; Belongs to the pirin family.
 
 
   0.646
gluQ
Glutamate--tRNA ligase; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily.
       0.618
Pnap_2933
KEGG: pol:Bpro_2903 FAD dependent oxidoreductase.
       0.599
Pnap_2935
PFAM: protein of unknown function DUF6, transmembrane; KEGG: ppr:PBPRB0783 hypothetical protein.
  
    0.575
Pnap_3802
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4548 transcriptional regulator, LysR family.
  
     0.572
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
       0.519
Pnap_2937
PFAM: pseudouridine synthase; KEGG: pol:Bpro_2906 pseudouridine synthase.
  
    0.506
Pnap_0296
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_0437 transcriptional regulator, LysR family.
  
     0.477
Pnap_0529
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_1086 transcriptional regulator, LysR family.
  
     0.449
Pnap_2930
PFAM: DoxX family protein; KEGG: pol:Bpro_2900 DoxX.
       0.445
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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