STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_2978PFAM: regulatory protein, MarR; KEGG: pol:Bpro_3545 transcriptional regulator, MarR family. (170 aa)    
Predicted Functional Partners:
Pnap_2977
PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3544 major facilitator superfamily MFS_1.
 
   
 0.802
Pnap_2979
TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_3546 phenylacetic acid degradation-related protein.
 
     0.646
Pnap_2976
PFAM: MaoC domain protein dehydratase; KEGG: pol:Bpro_3543 MaoC-like dehydratase.
 
     0.626
Pnap_1250
KEGG: pol:Bpro_3507 TRAP transporter solute receptor, TAXI family.
  
     0.512
Pnap_0185
KEGG: pol:Bpro_0233 putative lipoprotein.
  
     0.444
Pnap_3855
KEGG: rfr:Rfer_0328 hypothetical protein.
  
     0.437
Pnap_0437
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: mca:MCA1204 sensory box histidine kinase/response regulator.
  
  
 0.427
Pnap_0298
KEGG: pol:Bpro_0441 hypothetical protein.
  
     0.411
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.