STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3000PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3567 major facilitator superfamily MFS_1. (397 aa)    
Predicted Functional Partners:
Pnap_3001
PFAM: isochorismatase hydrolase; KEGG: rfr:Rfer_2520 isochorismatase hydrolase.
       0.473
Pnap_3002
Transcriptional regulator, AraC family; PFAM: ThiJ/PfpI domain protein; SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: rfr:Rfer_2523 transcriptional regulator, AraC family.
       0.473
Pnap_2998
PFAM: protein of unknown function DUF891; KEGG: xfa:XFa0034 hypothetical protein.
       0.450
Pnap_2999
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: nmu:Nmul_D2814 transcriptional regulator, XRE family.
       0.450
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.