STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3029PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_3597 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family. (329 aa)    
Predicted Functional Partners:
Pnap_2139
PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_0580 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 
0.929
Pnap_3810
PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_4556 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 
0.928
Pnap_3028
KEGG: pol:Bpro_3596 hypothetical protein.
       0.748
Pnap_0948
PFAM: malonate decarboxylase delta subunit; KEGG: reu:Reut_B4927 malonate decarboxylase delta subunit.
  
  
 0.700
mdcB
Triphosphoribosyl-dephospho-CoA synthase; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.
 
  
 0.697
mdh
Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
  
 0.665
Pnap_3027
Aconitase; PFAM: aconitate hydratase domain protein; aconitate hydratase 2; KEGG: pol:Bpro_3595 aconitate hydratase; Belongs to the aconitase/IPM isomerase family.
     
 0.581
Pnap_3031
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: pol:Bpro_3599 transcriptional regulator, GntR family.
 
   
 0.560
Pnap_2143
KEGG: pol:Bpro_0584 hypothetical protein.
 
  
 0.518
icmF
methylmalonyl-CoA mutase, large subunit; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
  
  
 0.484
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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