STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3120PFAM: glycosyl transferase, group 1; KEGG: pae:PA3149 probable glycosyltransferase WbpH. (372 aa)    
Predicted Functional Partners:
Pnap_3119
PFAM: glycosyl transferase, group 1; KEGG: cvi:CV4119 probable glycosyltransferase.
     0.971
Pnap_3125
PFAM: polysaccharide biosynthesis protein; KEGG: pae:PA3153 O-antigen translocase.
 
  
 0.885
glgB
Glycogen branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.710
Pnap_3126
PFAM: aminotransferase, class V; Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pae:PA3155 probable aminotransferase WbpE; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.635
Pnap_3128
KEGG: pae:PA3156 probable acetyltransferase WbpD.
 
  
 0.616
Pnap_3118
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: sat:SYN_01128 nucleotide-sugar aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.579
Pnap_3116
PFAM: sugar transferase; KEGG: eba:ebA5903 probable sugar transferase, WBGY.
 
  
 0.541
Pnap_2680
PFAM: sugar transferase; KEGG: pol:Bpro_1875 sugar transferase.
  
  
 0.475
Pnap_3176
PFAM: sugar transferase; KEGG: eba:ebA1531 colanic biosynthesis UDP-glucose lipid carrier transferase.
  
  
 0.475
Pnap_3117
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; KEGG: eba:ebA5901 predicted nucleoside-diphosphate sugar epimerase.
  
  
 0.460
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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