STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3132TIGRFAM: exopolysaccharide transport protein family; PFAM: lipopolysaccharide biosynthesis; KEGG: rso:RSp1018 eps I polysaccharide export transmembrane protein. (747 aa)    
Predicted Functional Partners:
Pnap_3133
PFAM: polysaccharide export protein; KEGG: bcn:Bcen_4169 polysaccharide export protein.
 
 
 0.996
Pnap_3196
PFAM: polysaccharide export protein; KEGG: bam:Bamb_6483 polysaccharide export protein.
 
 
 0.984
Pnap_3176
PFAM: sugar transferase; KEGG: eba:ebA1531 colanic biosynthesis UDP-glucose lipid carrier transferase.
 
  
 0.972
Pnap_2680
PFAM: sugar transferase; KEGG: pol:Bpro_1875 sugar transferase.
 
  
 0.967
Pnap_3194
TIGRFAM: exopolysaccharide transport protein family; PFAM: lipopolysaccharide biosynthesis; KEGG: rso:RSp1018 eps I polysaccharide export transmembrane protein.
 
 
0.939
Pnap_3481
PFAM: sugar transferase; KEGG: rfr:Rfer_1263 sugar transferase.
 
  
 0.900
Pnap_3116
PFAM: sugar transferase; KEGG: eba:ebA5903 probable sugar transferase, WBGY.
 
  
 0.887
Pnap_3195
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: ade:Adeh_4276 tyrosine phosphatase.
 
 
 0.858
Pnap_0825
NAD-dependent formate dehydrogenase flavoprotein subunit; PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: rfr:Rfer_3270 NADH dehydrogenase (quinone).
     
 0.769
Pnap_3480
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rme:Rmet_2723 polysaccharide biosynthesis protein CapD.
 
  
 0.763
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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