STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3211DNA translocase FtsK; PFAM: cell divisionFtsK/SpoIIIE; KEGG: pol:Bpro_3799 cell divisionFtsK/SpoIIIE. (818 aa)    
Predicted Functional Partners:
lolA
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
  
 0.910
Pnap_3209
Recombination protein MgsA; PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_3797 AAA ATPase, central region.
  
 0.883
Pnap_0068
Chromosome segregation DNA-binding protein; TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: pol:Bpro_0078 ParB-like partition proteins; Belongs to the ParB family.
  
   
 0.788
Pnap_2275
TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: bxe:Bxe_A3097 ParB-like partition protein; Belongs to the ParB family.
  
   
 0.785
Pnap_0066
Chromosome segregation ATPase; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pol:Bpro_0076 cobyrinic acid a,c-diamide synthase.
  
  
 0.761
xerC
Phage integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
   
 0.706
Pnap_3212
Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: pol:Bpro_3800 transcriptional regulator, Crp/Fnr family.
       0.681
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
   
 0.651
mraZ
TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: pol:Bpro_1066 protein of unknown function UPF0040; Belongs to the MraZ family.
 
  
 0.622
xerD
Tyrosine recombinase XerD subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
 
   
 0.619
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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