node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Pnap_1312 | Pnap_3217 | Pnap_1312 | Pnap_3217 | GTP-binding protein, HSR1-related protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | PFAM: Fmu (Sun) domain protein; KEGG: pol:Bpro_3805 Fmu (Sun). | 0.887 |
Pnap_1312 | rlmE | Pnap_1312 | Pnap_2612 | GTP-binding protein, HSR1-related protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 23S rRNA Um-2552 2'-O-methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | 0.887 |
Pnap_1312 | rplC | Pnap_1312 | Pnap_0203 | GTP-binding protein, HSR1-related protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.866 |
Pnap_1312 | rplJ | Pnap_1312 | Pnap_3642 | GTP-binding protein, HSR1-related protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.902 |
Pnap_1312 | rplM | Pnap_1312 | Pnap_0500 | GTP-binding protein, HSR1-related protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.837 |
Pnap_1312 | rplV | Pnap_1312 | Pnap_0208 | GTP-binding protein, HSR1-related protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | LSU ribosomal protein L22P; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 0.834 |
Pnap_1312 | rplW | Pnap_1312 | Pnap_0205 | GTP-binding protein, HSR1-related protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.851 |
Pnap_1312 | rplX | Pnap_1312 | Pnap_0331 | GTP-binding protein, HSR1-related protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | LSU ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.838 |
Pnap_1312 | rpmD | Pnap_1312 | Pnap_0338 | GTP-binding protein, HSR1-related protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | PFAM: ribosomal protein L30; KEGG: pol:Bpro_0493 ribosomal protein L30. | 0.928 |
Pnap_3217 | Pnap_1312 | Pnap_3217 | Pnap_1312 | PFAM: Fmu (Sun) domain protein; KEGG: pol:Bpro_3805 Fmu (Sun). | GTP-binding protein, HSR1-related protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 0.887 |
Pnap_3217 | fmt | Pnap_3217 | Pnap_3877 | PFAM: Fmu (Sun) domain protein; KEGG: pol:Bpro_3805 Fmu (Sun). | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.759 |
Pnap_3217 | rlmE | Pnap_3217 | Pnap_2612 | PFAM: Fmu (Sun) domain protein; KEGG: pol:Bpro_3805 Fmu (Sun). | 23S rRNA Um-2552 2'-O-methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | 0.832 |
Pnap_3217 | rplC | Pnap_3217 | Pnap_0203 | PFAM: Fmu (Sun) domain protein; KEGG: pol:Bpro_3805 Fmu (Sun). | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.769 |
Pnap_3217 | rplJ | Pnap_3217 | Pnap_3642 | PFAM: Fmu (Sun) domain protein; KEGG: pol:Bpro_3805 Fmu (Sun). | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.839 |
Pnap_3217 | rplM | Pnap_3217 | Pnap_0500 | PFAM: Fmu (Sun) domain protein; KEGG: pol:Bpro_3805 Fmu (Sun). | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.757 |
Pnap_3217 | rplV | Pnap_3217 | Pnap_0208 | PFAM: Fmu (Sun) domain protein; KEGG: pol:Bpro_3805 Fmu (Sun). | LSU ribosomal protein L22P; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 0.767 |
Pnap_3217 | rplW | Pnap_3217 | Pnap_0205 | PFAM: Fmu (Sun) domain protein; KEGG: pol:Bpro_3805 Fmu (Sun). | LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.758 |
Pnap_3217 | rplX | Pnap_3217 | Pnap_0331 | PFAM: Fmu (Sun) domain protein; KEGG: pol:Bpro_3805 Fmu (Sun). | LSU ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.775 |
Pnap_3217 | rpmD | Pnap_3217 | Pnap_0338 | PFAM: Fmu (Sun) domain protein; KEGG: pol:Bpro_3805 Fmu (Sun). | PFAM: ribosomal protein L30; KEGG: pol:Bpro_0493 ribosomal protein L30. | 0.760 |
fmt | Pnap_3217 | Pnap_3877 | Pnap_3217 | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | PFAM: Fmu (Sun) domain protein; KEGG: pol:Bpro_3805 Fmu (Sun). | 0.759 |