STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3241KEGG: rfr:Rfer_4383 hypothetical protein; Belongs to the 'phage' integrase family. (359 aa)    
Predicted Functional Partners:
Pnap_3243
PFAM: TatD-related deoxyribonuclease; KEGG: pol:Bpro_3885 TatD-related deoxyribonuclease.
  
    0.791
Pnap_3242
KEGG: pol:Bpro_3884 hypothetical protein.
       0.773
Pnap_3240
KEGG: pol:Bpro_3883 hypothetical protein.
       0.603
Pnap_3239
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_3882 type II secretion system protein E.
     
 0.506
Pnap_3244
PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: pol:Bpro_3890 peptidase S1 and S6, chymotrypsin/Hap.
     
 0.432
Pnap_3245
PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: pol:Bpro_3891 ATPase associated with various cellular activities, AAA_3.
       0.413
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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