STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3269KEGG: pol:Bpro_1010 twin-arginine translocation pathway signal. (429 aa)    
Predicted Functional Partners:
Pnap_3270
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1009 binding-protein-dependent transport systems inner membrane component.
 
 
 0.996
Pnap_3271
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1008 binding-protein-dependent transport systems inner membrane component.
 
 
 0.996
Pnap_3268
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_1011 ABC transporter related; Belongs to the ABC transporter superfamily.
 
 
 0.991
Pnap_2633
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0595 binding-protein-dependent transport systems inner membrane component.
  
 
 0.948
Pnap_2634
Transcriptional regulator, Fis family; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_0596 binding-protein-dependent transport systems inner membrane component.
  
 
 0.948
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
  
 
 0.939
Pnap_2632
PFAM: extracellular solute-binding protein, family 1; KEGG: rfr:Rfer_0594 extracellular solute-binding protein, family 1.
     
 0.901
Pnap_3273
PFAM: Asp/Glu racemase; KEGG: pol:Bpro_1006 Asp/Glu racemase.
 
     0.890
Pnap_3272
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_1007 transcriptional regulator, GntR family.
 
   
 0.767
Pnap_4069
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pol:Bpro_1497 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
     0.536
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.