STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3273PFAM: Asp/Glu racemase; KEGG: pol:Bpro_1006 Asp/Glu racemase. (251 aa)    
Predicted Functional Partners:
Pnap_3271
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1008 binding-protein-dependent transport systems inner membrane component.
 
     0.907
Pnap_3269
KEGG: pol:Bpro_1010 twin-arginine translocation pathway signal.
 
     0.890
Pnap_3272
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_1007 transcriptional regulator, GntR family.
 
     0.879
Pnap_3270
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1009 binding-protein-dependent transport systems inner membrane component.
 
     0.867
Pnap_3268
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_1011 ABC transporter related; Belongs to the ABC transporter superfamily.
 
     0.636
Pnap_0355
PFAM: polysaccharide deacetylase; KEGG: pol:Bpro_1424 polysaccharide deacetylase.
 
     0.583
Pnap_3274
PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pol:Bpro_1005 PHP-like.
       0.574
Pnap_3275
PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_1004 putative transmembrane protein.
       0.574
Pnap_3276
TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: pol:Bpro_1003 SUA5/YciO/YrdC/YwlC; Belongs to the SUA5 family.
       0.562
Pnap_3277
PFAM: peptidase M50; KEGG: rfr:Rfer_3239 peptidase M50.
       0.487
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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