STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3307Hypothetical protein; KEGG: bbr:BB3608 putative tail fiber assembly protein. (96 aa)    
Predicted Functional Partners:
Pnap_3306
PFAM: phage Tail Collar domain protein; KEGG: sit:TM1040_1289 putative variable tail fibre protein.
  
    0.824
Pnap_3308
PFAM: phage tail sheath protein; KEGG: yps:YPTB1841 putative bacteriophage P2 tail sheath protein.
  
    0.777
Pnap_3309
PFAM: phage major tail tube protein; KEGG: xom:XOO_1589 phage-related tail protein.
  
    0.711
Pnap_3301
PFAM: GPW/gp25 family protein; KEGG: syf:Synpcc7942_0739 hypothetical protein.
  
    0.585
Pnap_3302
PFAM: Baseplate J family protein; KEGG: sit:TM1040_1291 baseplate J-like protein.
  
    0.583
Pnap_3303
TIGRFAM: phage tail protein I; KEGG: sit:TM1040_1290 phage tail protein I.
  
  
 0.580
Pnap_3300
PFAM: phage baseplate assembly protein V; KEGG: bps:BPSL0156 phage baseplate assembly protein.
  
    0.570
Pnap_3310
KEGG: bxe:Bxe_A3076 hypothetical protein.
       0.512
Pnap_3304
Hypothetical protein.
       0.485
Pnap_3305
Hypothetical protein; KEGG: bte:BTH_II1774 serine protease, subtilase family.
       0.485
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.