STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3308PFAM: phage tail sheath protein; KEGG: yps:YPTB1841 putative bacteriophage P2 tail sheath protein. (391 aa)    
Predicted Functional Partners:
Pnap_3309
PFAM: phage major tail tube protein; KEGG: xom:XOO_1589 phage-related tail protein.
 
 0.996
Pnap_3301
PFAM: GPW/gp25 family protein; KEGG: syf:Synpcc7942_0739 hypothetical protein.
 
 
 0.993
Pnap_3306
PFAM: phage Tail Collar domain protein; KEGG: sit:TM1040_1289 putative variable tail fibre protein.
 
  
 0.991
Pnap_3315
PFAM: phage late control D family protein; KEGG: xcc:XCC2994 phage-related tail protein.
 
 
 0.987
Pnap_3303
TIGRFAM: phage tail protein I; KEGG: sit:TM1040_1290 phage tail protein I.
 
 
 0.980
Pnap_3314
PFAM: phage P2 GpU family protein; KEGG: xom:XOO_1585 phage-related tail protein.
 
 
 0.974
Pnap_3294
PFAM: phage tail X family protein; KEGG: spt:SPA2577 putative phage tail protein.
 
   0.971
Pnap_3302
PFAM: Baseplate J family protein; KEGG: sit:TM1040_1291 baseplate J-like protein.
 
   0.969
Pnap_3300
PFAM: phage baseplate assembly protein V; KEGG: bps:BPSL0156 phage baseplate assembly protein.
 
 
 0.967
Pnap_3288
TIGRFAM: phage portal protein, PBSX family; PFAM: phage portal protein; KEGG: bma:BMA2691 phage portal protein, PBSX family.
 
    0.906
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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