STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3320KEGG: rso:RSc1898 hypothetical phage-related protein. (962 aa)    
Predicted Functional Partners:
Pnap_3291
TIGRFAM: phage major capsid protein, P2 family; PFAM: phage major capsid protein, P2; KEGG: rso:RSc1937 probable bacteriophage protein.
  
   
 0.785
Pnap_3288
TIGRFAM: phage portal protein, PBSX family; PFAM: phage portal protein; KEGG: bma:BMA2691 phage portal protein, PBSX family.
  
    0.777
Pnap_3289
PFAM: protein of unknown function DUF264; putative terminase ATPase subunit; KEGG: bps:BPSL0172 phage terminase, ATPase subunit.
  
     0.774
Pnap_3290
PFAM: phage capsid scaffolding; KEGG: xom:XOO_1608 phage-related capsid scaffold protein.
  
     0.774
Pnap_3292
PFAM: phage small terminase subunit; KEGG: rso:RSc1936 probable bacteriophage protein.
  
     0.774
Pnap_3293
PFAM: phage head completion; KEGG: bps:BPSL0168 phage head completion/stabilization protein.
  
     0.773
Pnap_3319
PFAM: phage transcriptional activator, Ogr/delta; KEGG: bps:BPSL0138 hypothetical protein.
       0.773
Pnap_0963
KEGG: pfo:Pfl_0744 hypothetical protein.
  
 
 0.771
Pnap_2391
Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
  
 
 0.771
Pnap_3314
PFAM: phage P2 GpU family protein; KEGG: xom:XOO_1585 phage-related tail protein.
  
     0.763
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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