STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pnap_3342KEGG: rfr:Rfer_3961 hypothetical protein. (76 aa)    
Predicted Functional Partners:
Pnap_3341
PFAM: regulatory protein, LuxR; KEGG: DNA-binding response regulator, LuxR family.
       0.536
Pnap_0010
Hypothetical protein; KEGG: pol:Bpro_0021 metallophosphoesterase.
  
     0.528
Pnap_1041
PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: pol:Bpro_1488 protein of unknown function DUF1228.
  
     0.506
Pnap_4000
PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: rfr:Rfer_2436 pyridoxamine 5'-phosphate oxidase-related, FMN-binding.
  
     0.444
Pnap_0747
KEGG: pol:Bpro_0835 hypothetical protein.
  
     0.441
Pnap_0398
PFAM: response regulator receiver; KEGG: pol:Bpro_0882 response regulator receiver domain protein (CheY-like).
  
     0.420
Pnap_1365
PFAM: protein of unknown function DUF893, YccS/YhfK; KEGG: rme:Rmet_3187 protein of unknown function DUF893, YccS/YhfK.
  
     0.415
Pnap_0804
KEGG: pol:Bpro_3117 porin, gram-negative type.
  
     0.407
Your Current Organism:
Polaromonas naphthalenivorans
NCBI taxonomy Id: 365044
Other names: P. naphthalenivorans CJ2, Polaromonas naphthalenivorans CJ2, Polaromonas naphthalenivorans str. CJ2, Polaromonas naphthalenivorans strain CJ2
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